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CellGPT

Universal Single-Cell Embedding Atlas

Mapping cancer at the cellular level. AI-powered embeddings reveal hidden tumor subtypes, predict drug response, and enable early diagnosis.

How It Works

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Cell Embedding

Transform single-cell RNA, DNA, and protein data into high-dimensional vectors using our CellGPT neural encoder.

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UMAP Projection

Reduce dimensions with UMAP to reveal natural cell clusters β€” similar cells group together, just like similar words in NLP.

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Drug Response AI

Match patient tumor embeddings against 100K+ historical cases to predict optimal therapy with unprecedented accuracy.

The Vision: Biological Embeddings

Word Embedding (NLP)

King
Queen

Captures semantic relationships between words.

VS

Cell Embedding (Biology)

Stem Cell
Neuron

Captures biological states, lineages, and disease progression.

Applications

Hidden Cluster Discovery

Identify rare cancer stem cell populations missed by traditional clustering.

Early Blood Diagnosis

Detect circulating tumor cells (CTCs) with ultra-high sensitivity via liquid biopsy.

Personalized Therapy

Match individual cellular profiles to targeted therapies.

Biological Gravity Model

Model the pull of differentiation and metastasis in latent space.

Temporal Trajectories

Track disease progression and drug resistance over time.

Cross-Species Mapping

Translate findings from murine models directly to human biology.

Live Demo Preview

Technology Stack

Powered by state-of-the-art machine learning architectures optimized for high-dimensional biological data.

PyTorch FastAPI UMAP Three.js HuggingFace